Documentation
Getting startedInstallationLoading data with AirflowQuerying the databaseFinding tables in pgAdminHow SageRx worksData dictionary
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Use casesExample queriesInstallation
A guide to installing SageRx locally.
Install locally
GitHub repo
Prerequisites
- Install Docker.
- Windows users will also install WSL 2 (a Linux subsystem that runs on Windows) as part of this process.
Installation
- Clone the repo.
git clone https://github.com/coderxio/sagerx.git- Add a
.envfile at the root of the repo.
cd sagerx
touch .env- Add ENV vars to the
.envfile.
AIRFLOW_UID=<uid>
UMLS_API=<umls_api_key>AIRFLOW_UID=<uid>- UID can be found by runningid -uon linux systems, typically the first user on the system is1000or1001.- Windows users following the Docker Desktop install guide should have WSL 2 installed. You can open up command line, type
wsland then within WSL 2, you can enterid -uto see your UID. UMLS_API=<umls_api_key>- (optional) if you want to use RxNorm, you need an API key from UMLS.
- Run
docker-compose up airflow-initand wait until exit code 0.
Make sure docker is installed. See prerequisites section above.
docker-compose up airflow-init- Run
docker-compose up.
docker-compose upNOTE: if you have an M1 Mac export DOCKER_DEFAULT_PLATFORM=linux/amd64, and re-build your images
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